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Bacteria

This section includes dashboards and reports related to the genomic surveillance of bacteria, at this moment includes mainly Antibioitc resistance.

Dashboards (2)

EU-Wastewater Integrated Surveillance for Public Health
Precision Medicine Against Antimicrobial Resistance

Highlights (1)

May 28, 2025
Priority Pathogens List developped in the context of the PDN project.

Bioinformatic Resources (2)

Introductory course to wgs analysis for bacterial genomes, including outbreak investigation.
nf-core/bacass is a bacterial de novo assembly analysis pipeline