This section includes dashboards and reports related SARS-CoV-2.
Background
SARS-CoV-2 is the novel coronavirus responsible for the global COVID-19 pandemic, first identified in December 2019. As an RNA virus with high mutation rates, SARS-CoV-2 continues to evolve, leading to the emergence of new variants with potential implications for transmissibility, disease severity, and vaccine effectiveness.
Over the past years, genomic surveillance has been essential to:
- Track the spread of lineages and variants of concern (VOCs)
- Detect recombinant strains and mutation hotspots
- Inform public health responses and vaccine strategies
Despite a global decrease in case numbers, SARS-CoV-2 remains a pathogen of interest due to its continued evolution and potential for seasonal resurgences or variant-driven outbreaks.
Dashboards (4)
Regular updates on the COVID-19 situation in Spain based on the reporting of COVID-19 cases to the National Epidemiological Surveillance Network (RENAVE)
EU-Wastewater Integrated Surveillance for Public Health
National Laboratory Network for SARS-CoV-2 Genomic Sequencing
Acute Respiratory Infection Surveillance System
Highlights (1)
May 28, 2025
Priority Pathogens List developped in the context of the PDN project.
Bioinformatic Resources (1)
nf-core/viralrecon is a viral genome reconstruction analysis pipeline